List Rules Vote for your favorite Stargate Atlantis episodes, no matter how popular they are.
List of the best Stargate Atlantis episodes, as determined by voters like you. Developed as a spin-off of Stargate SG-1, Atlantis ran for five seasons and is critically acclaimedwith a strong following to this day. Ranked number one on best SyFy original shows, Stargate Atlantis is also on best TV shows canceled too early. With all the amazing episodes of the show that exist, it's hard to trust just one person's opinion of what the top Stargate Atlantis episodes of all time are. Fans of Stargate Atlantis are very passionate about the show, and there are often debates over which episodes are the greatest. That's why this list exists- so you can vote for your favorites and we can find out once and for all what everyone thinks the best episode is.
The list you're viewing has a variety of episodes in it, like "Miller's Crossing" and "Enemy at the Gate." What is the best Stargate Atlantis episode of all time? Look below and find out.
list ordered by
Tao of RodneyDec 11 2006 - After an Ancient device gives Rodney superhuman powers, his enhanced brilliance is checked only by his impending death -- unless he can learn how to ascend.
The ShrineAug 22 2008 - Rodney McKay is stricken with a mental affliction that robs him of his knowledge and memories, causing him to revert to a childlike state.
MidwayFeb 15 2008 - Teal'c visits Atlantis to counsel a headstrong Ronon, who is up for review by the I.O.A. But the two must work together when the Wraith invade the Midway space station in order to reach Earth.
Common GroundAug 25 2006 - Colonel Sheppard finds himself the prisoner of a Genii commander, along with a desperately hungry Wraith who has been separated from his hive.
AuroraSep 23 2005 - When the team finds an Ancient warship adrift on the edge of the galaxy, its crew still alive, Colonel Sheppard enters their virtual reality stasis to communicate with them.
The GameDec 18 2006 - Sheppard and McKay discover that their competitive video game has been controlling a planet of real people, who now stand on the brink of war.
Enemy at the GateJan 09 2009 - The team learns that a rogue Wraith has acquired several Z.P.M.s to power a formidable new hive ship -- and he is headed for Earth.
taran-barham added The StormSep 17 2004 - When a massive storm threatens the city, Atlantis is evacuated -- only to be taken over by the team's newest enemy.
Brain StormNov 21 2008 - Rodney returns to Earth with Jennifer to witness the triumph of his rival, who believes he has solved the problem of global warming. But when the new technology goes horribly awry, Rodney must ...more
Mycroft Roske added McKay and Mrs. MillerSep 08 2006 - Rodney McKay is reunited with his estranged sister back on Earth, who has given up a brilliant career as a scientist to raise a family.
SatedaAug 04 2006 - Ronon Dex is captured by the Wraith and returned to his homeworld, where he is haunted by his past as he is forced to once again become their prey.
DuetAug 05 2005 - A run-in with a Wraith Dart leaves the consciousness of a precocious Atlantis security officer trapped in Dr. McKay's mind.
Grace Under PressureDec 12 2005 - When Dr. McKay is trapped underwater in a sinking Puddle Jumper, his only chance for survival may be an hallucination of Samantha Carter.
First StrikeFeb 05 2007 - An unstoppable energy weapon leaves Atlantis under seige after Earth launches a preemptive attack against a very powerful enemy's homeworld.
QuarantineJan 18 2008 - An automated lockdown traps Atlantis personnel in various parts of the city, each of them hoping the others will come to their rescue.
Thirty-Eight MinutesJul 30 2004 - The team finds themselves in mortal danger when their Puddle Jumper ship becomes lodged in the Stargate.
ProgenyAug 11 2006 - Weir and the team visit an advanced civilization that split off from the Lanteans thousands of years ago, but discover that they may not have left Atlantis in peace.
Before I SleepFeb 18 2005 - A woman is found in suspended animation in Atlantis, and the team is shocked to see that it is Dr. Weir herself, who tells them of her trip 10,000 years into the city's past.
Rising Part 1 Season 1 Episode 1: A newly formed Stargate team heads into an unknown galaxy, discovers the lost city of Atlantis, and encounters a sinister new enemy.
The Return: Part 2 Season 3 Episode 11: With General O'Neill (Richard Dean Anderson) and Richard Woosley (Robert Picardo) trapped on Atlantis hiding from the Replicators, Col. Sheppard (Joe Flanigan) takes his team AWOL hoping to mount a rescue ...
Rising Part 2 Season 1 Episode 2: A newly formed Stargate team heads into an unknown galaxy, discovers the lost city of Atlantis, and encounters a sinister new enemy.
EchoesNov 27 2006 - The inhabitants of Atlantis begin to suffer ill effects when the planet's whale population begins migrating to the island city, bringing an unexpected harbinger of doom.
Hide and SeekJul 23 2004 - The Atlantis base is threatened when the team discovers that an alien entity is in the city. McKay's experiment with alien technology goes awry.
VegasJan 02 2009 - In the city of Las Vegas, Detective John Sheppard must solve the case on a long string of unusual murders -- perpetrated by a Wraith in hiding.
voxcati added SundayJan 15 2007 - The team tries to relax during a mandatory day off, until an explosion leaves three people dead -- and reveals that one scientist is a walking time bomb.
RemnantsNov 14 2008 - While being evaluated by the I.O.A. Richard Woolsey meets a beautiful scientist new to Atlantis, who is not what she appears. Sheppard is captured and tortured by an enemy he thought was dead.
TravelersOct 26 2007 - Colonel Sheppard is captured by the inhabitants of a generational ship and their beautiful leader, who wish to use his ability to use Ancient technology for their own ends.
The Siege Season 1 Episode 19: Tensions boil over as the Atlantis team scrambles to fortify the city against the coming battle with the Wraith.
Runner Season 2 Episode 3: When a routine, off-world science mission comes across a mutilated Wraith carcass, the team suspects Ford may be involved. Intrigued, they split into teams to investigate.
The Eye Season 1 Episode 11: When an approaching storm with awesome destructive capabilities causes Dr. Weir to evacuate the city, the Genii launch an invasion, and take control of Atlantis' weapons.
Be All My Sins Remember'd Season 4 Episode 11: Now armed with the means to track Replicator ships throughout the Pegasus Galaxy, the Atlantis teams strives to eliminate the Replicators once and for all.
The Last Man Season 4 Episode 20: Following another unsuccessful search for Teyla, Lt. Colonel Sheppard returns home to Atlantis to find the city completely abandoned.
PhantomsSep 15 2006 - Sheppard and Ronon are influenced by a mind-altering device created by the Wraith while on a mission to rescue a lost team.
Thirty Eight Minutes Season 1 Episode 4: Fleeing from a surprise encounter with the Wraith, Major Sheppard (Joe Flanigan) falls victim to an alien symbiote which is feeding off his life force and slowly paralyzes him.
The Daedalus Variations Season 5 Episode 4: A drive malfunction aboard a mysterious duplicate Daedalus sends the team jumping through various alternate realities where they encounter sinister alien life forms, a searing sun, and a pitched space battle ...
The Intruder Season 2 Episode 2: When a scientist is killed in the Daedalus' computer room, McKay (David Hewlett) first believes the poor circuitry is at fault.
The Lost Tribe Season 5 Episode 11: With the Daedalus under siege, Dr. Daniel Jackson and Rodney McKay try to keep a reactivated Ancient weapon from triggering a cataclysmic chain of events.
Trinity Season 2 Episode 6: While doing standard recon on a planet thought to have been destroyed by the Wraith long ago, the team finds an Ancient structure standing intact amidst the ruins.
The Hive Season 2 Episode 11: Captured by the Wraith, Sheppard (Joe Flanigan), Teyla (Rachel Luttrell), Ronon (Jason Momoa) and Ford (Rainbow Sun Francks) are being held hostage aboard a hive ship.
Letters From Pegasus Season 1 Episode 17: With a showdown with the entire Wraith armada imminent, the Atlantis team begins preparations for what may be their last stand.
Epiphany Season 2 Episode 12: After detecting an energy spike over a forested area on a distant planet, the Atlantis team decides to investigate. Their travels lead them to a portal built into a rock wall with Ancient carvings and a ...
The Seed Season 5 Episode 2: When a mysterious alien organism takes Dr. Keller as its host, Beckett and the crew desperately search for a serum to save her from the evolving intruder before it can infiltrate Atlantis.
The Siege: Part 3 Season 2 Episode 1: Rescued from a near-fatal encounter with the Wraith, Lt. Aiden Ford (Rainbow Sun Francks) receives medical care at the Atlantis base.
The Siege Part 2 Season 1 Episode 20: Tensions boil over as the Atlantis team scrambles to fortify the city against the coming battle with the Wraith.
Lifeline Season 4 Episode 2: Stargate Atlantis returns for an action packed fourth season with the team welcoming new members and battling enemies new and old.
Critical Mass Season 2 Episode 13: General Landry (Beau Bridges) informs the team that the Goa'uld has planted a bomb on Atlantis and will be triggered by any attempt to dial the gate.
No Man's Land Season 3 Episode 1: With information stolen from the Atlantis database, two Wraith hive ships travel toward Earth to launch an attack.
Michael Season 2 Episode 18: Lt. Michael Kenmore awakens in Atlantis' infirmary with no memory of how he got there - or who he is.
Tabula Rasa Season 4 Episode 6: With almost everyone on Atlantis infected by an amnesia-causing virus, McKay (David Hewlett) finds himself zap-strapped to his desk with cryptic letters on his arm and no memories of who he is or what has ...
The Real World Season 3 Episode 6: Dr. Weir awakens in a psychiatric hospital on Earth to discover that her entire experience in Atlantis over the last two years was solely a figment of her imagination.