List of the best Stargate Atlantis episodes, as determined by voters like you. Developed as a spin-off of Stargate SG-1, Atlantis ran for five seasons and is critically acclaimed with a strong following to this day. Ranked number one on best SyFy original shows, Stargate Atlantis is also on best TV shows canceled too early. With all the amazing episodes of the show that exist, it's hard to trust just one person's opinion of what the top Stargate Atlantis episodes of all time are. Fans of Stargate Atlantis are very passionate about the show, and there are often debates over which episodes are the greatest. That's why this list exists- so you can vote for your favorites and we can find out once and for all what everyone thinks the best episode is.The list you're viewing has a variety of episodes in it, like "Miller's Crossing" and "Enemy at the Gate." What is the best Stargate Atlantis episode of all time? Look below and find out.
list ordered by
Tao of Rodney Dec 11 2006
After an Ancient device gives Rodney superhuman powers, his enhanced brilliance is checked only by his impending death -- unless he can learn how to ascend.
The Shrine Aug 22 2008
Rodney McKay is stricken with a mental affliction that robs him of his knowledge and memories, causing him to revert to a childlike state.
Common Ground Aug 25 2006
Colonel Sheppard finds himself the prisoner of a Genii commander, along with a desperately hungry Wraith who has been separated from his hive.
Midway Feb 15 2008
Teal'c visits Atlantis to counsel a headstrong Ronon, who is up for review by the I.O.A. But the two must work together when the Wraith invade the Midway space station in order to reach Earth.
taran-barham added The Storm Sep 17 2004
When a massive storm threatens the city, Atlantis is evacuated -- only to be taken over by the team's newest enemy.
Aurora Sep 23 2005
When the team finds an Ancient warship adrift on the edge of the galaxy, its crew still alive, Colonel Sheppard enters their virtual reality stasis to communicate with them.
Mycroft Roske added McKay and Mrs. Miller Sep 08 2006
Rodney McKay is reunited with his estranged sister back on Earth, who has given up a brilliant career as a scientist to raise a family.
Brain Storm Nov 21 2008
Rodney returns to Earth with Jennifer to witness the triumph of his rival, who believes he has solved the problem of global warming. But when the new technology goes horribly awry, Rodney must ...more
Grace Under Pressure Dec 12 2005
When Dr. McKay is trapped underwater in a sinking Puddle Jumper, his only chance for survival may be an hallucination of Samantha Carter.
Enemy at the Gate Jan 09 2009
The team learns that a rogue Wraith has acquired several Z.P.M.s to power a formidable new hive ship -- and he is headed for Earth.
Duet Aug 05 2005
A run-in with a Wraith Dart leaves the consciousness of a precocious Atlantis security officer trapped in Dr. McKay's mind.
The Game Dec 18 2006
Sheppard and McKay discover that their competitive video game has been controlling a planet of real people, who now stand on the brink of war.
Thirty-Eight Minutes Jul 30 2004
The team finds themselves in mortal danger when their Puddle Jumper ship becomes lodged in the Stargate.
Sateda Aug 04 2006
Ronon Dex is captured by the Wraith and returned to his homeworld, where he is haunted by his past as he is forced to once again become their prey.
Quarantine Jan 18 2008
An automated lockdown traps Atlantis personnel in various parts of the city, each of them hoping the others will come to their rescue.
Before I Sleep Feb 18 2005
A woman is found in suspended animation in Atlantis, and the team is shocked to see that it is Dr. Weir herself, who tells them of her trip 10,000 years into the city's past.
First Strike Feb 05 2007
An unstoppable energy weapon leaves Atlantis under seige after Earth launches a preemptive attack against a very powerful enemy's homeworld.
voxcati added Sunday Jan 15 2007
The team tries to relax during a mandatory day off, until an explosion leaves three people dead -- and reveals that one scientist is a walking time bomb.
The Last Man
Season 4 Episode 20: Following another unsuccessful search for Teyla, Lt. Colonel Sheppard returns home to Atlantis to find the city completely abandoned.
Progeny Aug 11 2006
Weir and the team visit an advanced civilization that split off from the Lanteans thousands of years ago, but discover that they may not have left Atlantis in peace.
The Return: Part 2
Season 3 Episode 11: With General O'Neill (Richard Dean Anderson) and Richard Woosley (Robert Picardo) trapped on Atlantis hiding from the Replicators, Col. Sheppard (Joe Flanigan) takes his team AWOL hoping to mount a rescue mission before General Landry (Beau Bridges) nukes the city.
Echoes Nov 27 2006
The inhabitants of Atlantis begin to suffer ill effects when the planet's whale population begins migrating to the island city, bringing an unexpected harbinger of doom.
The Daedalus Variations
Season 5 Episode 4: A drive malfunction aboard a mysterious duplicate Daedalus sends the team jumping through various alternate realities where they encounter sinister alien life forms, a searing sun, and a pitched space battle over Atlantis.
Remnants Nov 14 2008
While being evaluated by the I.O.A. Richard Woolsey meets a beautiful scientist new to Atlantis, who is not what she appears. Sheppard is captured and tortured by an enemy he thought was dead.